cover of the ambitious kitchen cookbook
The Ambitious Kitchen Cookbook
A New York Times Bestseller

Healthy Pumpkin Chocolate Chip Muffins

The best healthy pumpkin muffins made with whole wheat flour, naturally sweetened with pure maple syrup and loaded with cozy pumpkin spices. These healthy pumpkin muffins are freezer friendly and delicious with a few chocolate chips! Great for kids and any time you’re craving a fall snack.

Prep Time
10 mins
Cook Time
25 mins
Total Time
35 mins

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  • says:

    Very tasty! But wondering if the one cup of pumpkin puree is supposed to read one can? Mine came out a bit dry.

    • replied:

      I also used regular whole wheat flour instead of pastry flour!

  • says:

    5 stars
    Delicious! I made some modifications that worked well. I substituted 1-for-1 gf flour, did 1/8cup butter and 1/8 cup pureed great northern white beans. I was also lazy with the spices so I did approximately 2 tsp of cinnamon and 1.5tsp pumpkin pie spice, I also doubled the vanilla.

    • replied:

      I also subbed honey for maple syrup. I handle honey better than maple syrup.

      • replied:

        Perfect! I’m glad those swaps worked out!

  • says:

    5 stars
    Loved this recipe. Taste better than the ones with real sugar I used honey instead of maple syrup and then I did a cup of gluten-free flour and a half cup of almond flour they turned out great.

    • replied:

      Absolutely! Glad those swaps worked out well 🙂

  • says:

    Can I substitute gluten free flour?

    • replied:

      I haven’t tested it with these muffins, but a 1:1 gluten free all purpose flour might work! Otherwise, use that flour in these pumpkin muffins 🙂

  • says:

    5 stars
    One of our favorite muffins recipes! Delicious, easy and healthy.

    • replied:

      I’m so glad!

  • says:

    5 stars
    Love these muffins! Any thoughts on using chickpea flour?

    • replied:

      I haven’t tried it in these muffins, so I’m not sure how the texture, flavor, etc. will change!

  • says:

    5 stars
    Amazing recipe! This recipe shows that you don’t need all of the sugar most recipes call for to have a delicious treat. Huge fan of all of your recipes Monique—you’re incredible!

    • replied:

      Absolutely! Glad you enjoyed!

  • says:

    5 stars
    My kids and I love these so much! I want to make them for their preschool class and need to make them seed free. If I omit the flaxseed meal, should I add anything in its place? Thanks!

    • replied:

      Hi! Are you by chance referring to a different muffin recipe?

  • says:

    5 stars
    My kids and I love these so much! I want to make them for their preschool class and need to make them seed free. If I omit the flaxseed meal, should I add anything in its place? Thanks!

  • says:

    Have been making these for years for my 5 year old and I. I recently need to go gluten free. If I use Bob’s Red Mill all purpose gluten free flour, is it the same amount as the whole wheat flour called for?

    • replied:

      I haven’t tested it but yes, I’d try using the same amount of 1:1 GF all purpose flour!

  • says:

    Turned out good however I realized I didn’t use the pumpkin spice. It says it is an ingredient in top but then doesn’t list it on the list section or directions. Did I do it wrong??

    • replied:

      Hi! All of the spices listed create the pumpkin pie spice 🙂

  • says:

    4 stars
    So tasty!! My only “complaint” would be that I could taste the baking soda after baking even when only using the amount told. I wonder if baking powder would give it a lighter flavor? Either way fabulous recipe!

    • replied:

      So strange! This is the same amount I use in almost all of my muffin recipes, so I’m not sure why the flavor is coming out stronger. I think baking powder would give these a different texture!

  • says:

    5 stars
    Followed recipe as is and these came out amazing. I thought about adding cacao but wasn’t sure how much to add so I left it out. Baked at 350 convection for 25 mins.

    • replied:

      Perfect! Glad you enjoyed!

  • says:

    5 stars
    I used applesauce instead of oil and I used flax eggs and they turned out very good!:)

    • replied:

      So glad that worked well!

  • says:

    5 stars
    Perfect recipe for healthier muffins for my kids! Before adding the chocolate chips I scooped some batter into mini muffin tins for the children. Then I added the chocolate chips and topped with some brown sugar to make some non-healthy muffins for us parents! Also I did the bakery-style muffin tricks of filling every other muffin cup, and baking at 425 for 4 minutes then reducing the temperature to 350. The mini muffins took about 10 minutes to cook!

    • replied:

      Love that! Great ideas!

  • says:

    I’m sick of recipes claiming to be sugar free when they actually just substitute one type of sugar for another. Using maple syrup instead of refine sugar does not make them any healthier.
    A tablespoon of sugar has 12.6 grams of sugar, 48.9 calories and 12.6 grams of carbohydrates, according to the USDA. It also has a glycemic index of 65. A tablespoon of maple syrup has 52 calories, 12.1 grams of sugar and 13.4 grams of carbohydrates. It has a glycemic index of 54.
    The difference is so small that it is negligible.

    • replied:

      Hi! I didn’t label this recipe as sugar free, rather than these muffins are naturally sweetened.

  • says:

    5 stars
    These were simple to make and incredible! I used gluten free flour and made both regular sized and mini muffins. I will absolutely be making them again!

    • replied:

      Perfect! Glad you enjoyed 🙂

  • says:

    5 stars
    Great recipe! My 3 kids ate the entire batch in one day. I made them again tonight, but this time doubled the recipe because they’ll go quickly again. I made them as written, and my two oldest said they were the best muffins I’ve ever made. I make muffins pretty much every week, so that’s a BIG praise from them. Another great recipe from the Muffin Queen!

    • replied:

      Amazing! So glad everyone loved them!

  • says:

    5 stars
    I love these muffins so much that since I first tried them a few months ago, I make them again every time we run out. They make a great breakfast or snack. So good! Enough said . . . I’m heading to my kitchen to make more now!

    • replied:

      Love that! Perfect for fall and winter 🙂 I love to keep some in the freezer, too!

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