There’s something truly magical about biting into a perfectly fluffy, deliciously sweet muffin. Maybe that’s just me, but then again, I do have over 70 muffin recipes on my site (and am the designated self-proclaimed Muffin Queen).
So today I’m bringing you a brand new muffin that feels like an old school, bakery-style classic. These chocolate chip yogurt muffins have those beautiful, tall tops, tender middles, and melty chocolate in every bite. My kids and husband were obsessed with these!! There are a few tips to making them beautiful, soft and fluffy so be sure to read the post!
I like to sprinkle the tops with a little coarse sugar to make them extra special, and let me just say, WOW. You’ll never need another chocolate chip muffin recipe again after these.

Everything you’ll need to make these chocolate chip yogurt muffins
These beautiful chocolate chip greek yogurt muffins use fridge and pantry staples for a go-to muffin you can bake any day. Here’s what you’ll need:
- Flour: we’re using regular all-purpose flour in these muffins. See below for an easy gluten-free swap!
- Yogurt: whole milk or 2% plain Greek yogurt gives these muffins moisture and necessary fat. Do not use fat free yogurt!
- Maple syrup: naturally sweeten the muffins with pure maple syrup.
- Olive oil: we’re also adding a little olive oil for an extra boost of moisture.
- Eggs: you’ll need 2 eggs to help the muffins bake properly. Make sure they are at room temperature!
- Baking staples: you’ll also need both baking powder and baking soda, salt, and vanilla extract.
- Chocolate chips: because who doesn’t love melty chocolate in every bite? We’re mixing chocolate chips right into the batter and sprinkling the tops with a few extras.

Try a gluten-free version
Keep these muffins gluten-free by using gluten-free all-purpose flour. I like King Arthur Measure for Measure Flour.
Ingredient swapping do’s and don’ts
This recipe is pretty forgiving when it comes to swapping ingredients, but as always, do so at your own risk!
- For the yogurt: if you want to make these dairy-free, I suspect that a thicker dairy-free yogurt would work well, such as Siggi’s plant-based cups. Let me know if you give it a try in the comments! Use dairy-free chocolate chips as well.
- For the eggs: I haven’t tested these with flax eggs, but I worry they may come out too dense. If you want to keep these vegan, you’ll also want to use dairy-free chocolate chips and a dairy-free, thick Greek-style yogurt.
- For the maple syrup: I don’t recommend swapping for another sweetener like honey because the flavor will change and the muffins may be more prone to burning.
- For the olive oil: A good quality extra-virgin olive oil is essential. Otherwise, feel free to use avocado oil, melted virgin coconut oil, or melted butter.

Perfect chocolate chip yogurt muffins in 5 steps
There are a couple of special steps in here that will help you achieve taller, fluffier muffins!
- Prep your pan. Line your muffin pan with just 10 liners and spray the insides with nonstick cooking spray.
- Whisk the dry ingredients. Whisk all of the dry ingredients together in a large bowl.
- Make the batter. Mix the wet ingredients in a separate bowl, then mix in the dry ingredients with a wooden spoon until just combined. Fold in the chocolate chips.
- Bake the muffins. Fill the muffin liners with the batter to the top, top with chocolate chips and sugar (if using), then bake at 425 degrees F for just 7 minutes. Without opening the oven door, reduce the temperature to 350 degrees F and continue baking for 8-13 minutes until a toothpick comes out clean. Cool & enjoy!

Add a bakery-style sweetness
I like to sprinkle the tops of each muffin with about a 1/2 teaspoon of granulated or coarse sugar to give it that sweet little crunch on top! This is, of course, optional, but highly recommended.
Want extra tall muffins?
I’m talking about those beauties with the giant dome tops from your local bakery. SO GOOD. Try the method with these chocolate chip yogurt muffins:
- Only fill every other muffin cup with a muffin liner and batter so they are evenly spaced (6 muffins per batch).
- Bake as directed!
NOTE: This means you will need to bake them in two batches. (Don’t forget to bring the temperature back up to 425°F once the first batch is done baking!)

Make mini muffins
I love making these into mini muffins for quick kiddo snacks. Simply pour the batter into a mini muffin pan and bake at 400 degrees F for 13 to 18 minutes!
Try a chocolate chip yogurt bread
You can also turn this muffin recipe into a loaf instead! Here’s how:
- Make the muffin batter as directed.
- Pour into a greased 8 1/2 x 4 1/2 inch loaf pan lined with parchment paper.
- Bake for 50 to 60 minutes at 350 degrees F until a toothpick inserted into the middle comes out clean.

Freezer-friendly chocolate chip yogurt muffins
Wrap muffins individually in freezer-safe bags or store them in a large freezer bag. When you’re ready to enjoy them, reheat for 30-45 seconds in the microwave or simply thaw them at room temperature.
Our fav muffin-baking tools
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More muffin recipes
- Paleo Double Chocolate Tahini Banana Muffins
- The Best Bakery Style Blueberry Muffins You’ll Ever Eat
- Cranberry Orange Muffins
- Marbled Banana Muffins
- Blender Double Chocolate Spinach Muffins
Get all of my muffin recipes here!
I hope you love these chocolate chip yogurt muffins! If you make them, be sure to leave a comment and a rating so I know how you liked them. Enjoy, xo!
Ambitious Kitchen
Cookbook
125 Ridiculously Good For You, Sometimes Indulgent, and Absolutely Never Boring Recipes for Every Meal of the Day
Chocolate Chip Greek Yogurt Muffins

Ingredients
- Dry ingredients
- 210 grams (1 ¾ cups) all purpose flour (or sub white whole wheat flour or gf all purpose flour)
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon kosher salt
- Wet ingredients
- 225 grams (1 cup) plain Greek yogurt (whole-milk or 2% is best)
- 104 grams (⅓ cup) pure maple syrup
- 67 grams (⅓ cup) extra virgin olive oil (or sub avocado oil, melted virgin coconut oil or melted butter)
- 2 large eggs, at room temperature
- 2 teaspoons vanilla extract
- Mix-ins and topping
- 90 grams (½ cup) chocolate chips, plus 2 to 3 tablespoons for sprinkling on top
- Optional: 1 to 2 tablespoons granulated or coarse sugar, for sprinkling on top
Instructions
- Prep your muffin pan: Preheat the oven to 425 degrees F. Line a 12 cup muffin tin with 10 muffin liners (we're making 10 BIG muffins!) and spray the liners with nonstick cooking spray to prevent sticking.
- Mix the dry ingredients: In a large bowl, whisk together the flour, baking powder, baking soda, and salt until well combined.
- Combine the wet ingredients: In a separate large bowl, whisk together the greek yogurt, maple syrup, olive oil, eggs, and vanilla extract until smooth and well combined. Add the dry ingredients to the wet ingredients and stir with a wooden spoon until well combined.
- Add the chocolate chips: Gently fold the chocolate chips into batter with a wooden spoon until incorporated.
- Bake the muffins: Divide batter evenly into the prepared muffin liners, filling all the way to the top. (Don't be nervous, these are going to bake up beautifully!) If desired, sprinkle the top of each muffin with a few extra chocolate chips and about a ½ teaspoon of sugar. Bake at 425 degrees F for 7 minutes, then reduce the heat in the oven to 350 degrees (DO NOT OPEN THE OVEN) and bake for 8 to 13 minutes more or until the toothpick comes out clean or with just a few crumbs attached. Makes 10 big muffins!
Recipe Notes
Nutrition
Recipe by: Monique Volz // Ambitious Kitchen | Photography by: Eat Love Eats

The easiest muffins to make and absolutely delicious.
How long will they last room temp and or in the fridge?
Our favorites! Feel free to keep them at room temp for a day, then I’d recommend storing them in the fridge for up to 3-4 days.
These are a new favorite in our house! So easy to make and turn out perfectly every time. I ran out of oil in the process of my most recent batch so substituted a little apple sauce and still tasted perfect.
Perfect! So glad they’re a hit!
Can you use oat flour for these?
I haven’t tested it, so I can’t recommend it!
How much sugar can i substitute instead of maple syrup?
2/3 cup should be fine!
Delicious! Will share with my neighbors. Used salted butter so scanted the salt a bit. Used full fat Greek yogurt as directed. Made 12 muffins because my muffin tin has 12 holes.
Perfect! Hope your neighbors love them 🙂
Another winner recipe from Monique! I made these this morning and have found myself eating a few of them throughout the day today. They are so good! Not too sweet and really just perfect. i used 63% chocolate chips in the muffins and topped them with raw sugar before baking. Thank you for this recipe!
One of our all-time favs! So glad you love them!!
They were delicious!
So glad you enjoyed!
These are so incredibly good and easy! My whole family loves them. The greek yogurt from Costco, which is super tangy, really makes these! (Sorry Fage) My kids ask for these all the time, making them prob at least twice a week and feeling better about them eating these than more sugary options in the morning.
Amazing! The perfect snack for the whole family 🙂
These taste great! Wondering how you find they keep? I’m keeping mine in the fridge inside a tightly sealed zip lock which seemed to be better than room temp. After a few days at room temp the “tacky” top started to get moldy.
How are you storing them and for how long?
I recommend keeping them at room temp for a day and then, yes, storing them in the fridge for up to 4 or so after that!
Followed the recipe to a T and they were incredible. I will be making another batch this weekend. My 1 year old also ate 1.5 of them!!!
The best! These are my kiddos’ favs, too 🙂
This is my new favourite muffin recipe! I was amazed at how high they rise up! My family loves them! And they are healthy! A win win muffin recipe! Thank you!😊
Ours, too! Glad these are a hit!
I have made these more times than I count! They always turn out great and don’t last long around my house!
So happy to hear that!
Love these! My kids can’t get enough of them and they are super easy to make!
I’m so glad!!
These muffins are down-right delicious!!! So soft, pillowy with great texture, and just plain yummy! I was worried before baking these, I thought I messed up, because the batter was thick, and paste-like— It was a different texture. But, don’t be afraid, they baked up beautifully!!! I will make these again! Yum! Thanks for the recipe!
Yes, the batter is thicker than typical muffin batter but it keeps them extra fluffy! Glad you loved them!
Easy to make and delicious, my toddler loves! Subbed honey for maple syrup and used half butter and half olive oil. Followed directions to bake and after lowering temp 10 mins in the oven was perfect
Amazing! These are our new go-to, too 🙂
Added these to my recipe rotation!
So glad you enjoyed!
I’ve made a few different Greek yogurt muffin recipes and these by far are the best. They are fluffy and light. The flavor is so good. I made mini muffins for my two year old and mixed in mini choc chips and sprinkles. I just adjusted the cooking time. All of Monique’s recipe are amazing so I’m not surprised at how good these are!!
Love that! So glad they’re a new favorite!
I loved these muffins and will definitely make them again. I made them with Bob’s Red Mill gluten free all-purpose flour. Mm, so cakey, just sweet enough (I used honey instead of maple syrup). I couldn’t stop eating them 🙂
Perfect! Glad you enjoyed!
These came out beautifully!! Big and delicious!
So happy to hear that!
I used avocado oil and mini chocolate chips. I did not top with more chocolate chips or sugar. My whole family killed these! I love how big they were. The taste is like a bakery but not super filling and you don’t feel bad after. I love using syrup in muffin recipes. Next time I think I’ll do melted butter instead of oil. I used whole milk plain Greek yogurt and I love using a scale to get precise measurements. Thank you! This recipe will be used often.
Amazing! So glad they were a hit!
Followed the recipe to a T and these came out perfectly! They almost remind me of those bags of mini muffins, the texture is unique and they’re so yummy.
YES so good! Glad you enjoyed!
Made these as a healthy muffin for our school and they were a hit. Very moist and full of flavor without unwanted sugar!! It’s a YES for us.
So happy to hear that!!
These are delicious and fluffy!!! My kids love them as well. Do you store them in the fridge if you don’t freeze them?
So happy to hear that! Feel free to keep them at room temp for a day, then I’d recommend storing them in the fridge.
My 3 boys are obsessed with these muffins! I make them once a week. They are such an easy, healthy, delicious snack!
I’m so glad!!
These are delicious! Followed the recipe exactly and they are so fluffy! Easy and quick which is even better!!
YES perfect snack or breakfast!