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healthy lemon poppyseed muffin with blueberry glaze
Recipe RoundupsMuffin Recipes
February 19, 2019

The Best Healthy Muffin Recipes from the Muffin Queen

The best healthy muffin recipes come in all shapes and sizes. Inside this recipe round up you’ll find gluten free, paleo, dairy free, grain free and even low carb muffins to enjoy. All from the self-proclaimed muffin queen.


That’s right, this muffin queen (hi, it’s me!) rounded up my favorite healthy muffin recipes that are perfect for breakfast, snack, desserts, and especially sharing with the people you love. LET’S DO IT UP PEOPLE.

Truth: I call baking my therapy. When I’m feeling anxious, I trash up my kitchen and bake my heart out. It soothes the soul.

But you know what I love even more? Baking for the ones I love. There’s nothing better than expressing your love and gratitude for someone than with fresh baked goodies.

Each of these healthy muffin recipes has a unique flavor and add-ins, but they all have one thing in common…they are amazingly fluffy, perfectly sweet and have wholesome ingredients. I created these recipes using different flours so that there’s a good mix of regular and gluten-free that you can share with anyone.

After all, muffins are one of my favorite ways to show some love to friends and family. So, it’s time! Time to take a scroll through this fluffy goodness, preheat the oven, and get baking. Share with a loved one, and be sure to freeze extra for yourself. Enjoy!

These 31 incredible muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
1. Healthy Pumpkin Chocolate Chip Muffins

lemon poppyseed muffin with a bite taken out

2. Healthy Lemon Poppyseed Muffins with Lemon Blueberry Glaze

vegan paleo banana muffin with a bite taken out

3. Vegan Paleo Banana Muffins with Chocolate Chips

skinny banana chocolate chip muffin with a bite taken out on a wire rack

4. Skinny Banana Chocolate Chip Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!5. Healthy Pumpkin Banana Muffins with Macadamia Nut Crunch

Healthy gingerbread muffins that are incredibly fluffy, warm and perfect with a cup of coffee. One of my favorite muffins to enjoy during the Winter.

6. Healthy Gingerbread Muffins

Fluffy roasted sweet potato muffins packed with delicious flavors and plenty of chocolate chips. Great for breakfast, snacks or freezing for later! 

7. Healthy Sweet Potato Chocolate Chip Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
8. Power Flax Chocolate Chip Banana Oatmeal Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
9. Healthy Whole Grain Carrot Cake Morning Glory Muffins

Wholesome, healthy bran muffins inspired by my Grandma! These muffins are made with whole grains, blackstrap molasses and applesauce; they're the perfect on-the-go breakfast or snack and are freezer friendly.

10. Grandma’s Healthy Bran Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!

11. Chai-Spiced Pumpkin Oatmeal Muffins with Vanilla Bean Cream Cheese Glaze

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
12. Strawberry Banana Chocolate Chip Oat Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
13. Paleo Banana Zucchini Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
14. Healthier Blueberry Greek Yogurt Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
15. Honey Pumpkin Cornbread Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
16. Raspberry, Almond Butter & Banana Oatmeal Muffins

Healthy zucchini banana muffins packed with shredded zucchini, banana, heart-healthy walnuts, coconut and dark chocolate chips. These delicious muffins pack in both fruits and veggies, making them the perfect healthy snack! Freezer-friendly and a great way to use up zucchini!17. Chunky Monkey Zucchini Banana Muffins

Flourless black bean muffins that taste like a delicious, cakey brownie! These easy, fiber packed muffins are gluten free and the perfect healthy treat.

18. Gluten Free Flourless Black Bean Brownie Muffins

three blueberry zucchini muffins in a stack
19. Good Morning Healthy Blueberry Zucchini Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
20. Chai-Spiced Healthy Apple Oatmeal Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
21. Oatmeal Blueberry Applesauce Muffins with Walnut Oat Streusel

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
22. Skinny Double Chocolate Banana Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
23. Chia, Lemon & Strawberry Zucchini Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
24. Healthy Double Chocolate Zucchini Muffins

The dreamiest orange chocolate chip muffins made with fresh orange juice and orange zest! These healthy muffins are addicting, simple to make and the perfect treat.

25. Dreamy Orange Chocolate Chip Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
26. The Best Healthy Blueberry Oatmeal Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
27. Double Chocolate Coconut Flour Muffins

Double chocolate tahini banana muffins that are both paleo, dairy free and gluten free. These healthy chocolate muffins are the perfect treat to pack in a lunch box or share with friends!

28. Paleo Double Chocolate Tahini Banana Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
29. Flax Almond Meal Banana Muffins with Dark Chocolate

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
30. Healthy Blueberry Zucchini Cornbread Muffins

These 31 healthy muffin recipes are perfect for breakfast or an afternoon snack. Fluffy and packed with goodness - share them with your loved ones!
31. Healthy Carrot Cake Muffins with Cream Cheese Glaze

Bonus muffins:

Incredibly fluffy marbled chocolate pumpkin muffins swirled with pumpkin spice batter and chocolate chip chocolate batter. These muffins are made with wholesome ingredients and make the perfect snack or healthier treat.
Healthy Marbled Chocolate Pumpkin Muffins
Fluffy, healthy dairy free and gluten free banana muffins with chocolate chips. Sweetened with bananas and pure maple syrup and made with a mix of almond flour and oat flour! These muffins are freezer-friendly and great for breakfasts or snacks!
Dairy Free + Gluten Free Banana Muffins

Tell me: What kind of muffins should I bake next?! Muffin week 2019 is coming and I need all of your suggestions!

If you make any of these healthy muffin recipes leave a comment and let me know how you liked them! Share your creations on social media and be sure to tag #AmbitiousKitchen on Instagram so that I can see your amazing work. xo!

5 Secrets to Healthy and Delicious Desserts

5 Secrets to Healthy and Delicious Desserts

Get my best easy tips for healthy baking in this free email series!

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